Soil metal pollution is a global issue due to its toxic nature affecting ecosystems and human health. This has become a concern since metals are non-biodegradable and toxic. Most of the reclamation methods currently used for soils rely on the use of physical and chemical means, which tend to be very expensive and result in secondary environmental damage. However, microbe-aided phytoremediation is gaining attention as it is an ecofriendly, affordable, and technically advanced method to restore the ecosystem. It is essential to understand the complex interaction between plants and microbes. The primary function of plant growth-promoting bacteria (PGPB) is to stimulate plant development, aid in metal elimination, and reduce their bioavailability in the soil. These microbes regulate phytohormones, stimulate processes such as phytoextraction and phyto-stabilization, and improve the uptake of essential nutrients, such as nitrogen and phosphorus. PGPBs secrete a range of enzymes and chemicals, fix nitrogen, solubilize minerals, increase the bioavailability of nutrients under diverse biological environments with high salinities, excessive metal-contaminated soil, and organic pollutants, increase the soil fertility and help in the reclamation of agriculture and regenerate the native flora. The integration of CRISPR-Cas9 gene-editing technology with microbialaided phytoremediation and the use of genetically modified microbes with nanomaterials further enhance the efficacy of the approaches in polluted environments for sustainable restoration of the soil.