Iron (Fe) minerals possess a huge specific surface area and high adsorption affinity, usually considered as rust tanks of organic carbon (OC), playing an important role in global carbon storage. Microorganisms can change the chemical form of Fe by producing Fe-chelating agents such as side chains and form a stable complex with Fe(III), which makes it easier for microorganisms to use. However, in seasonal frozen soil thawing, the succession of soil Fe-cycling microbial communities and their coupling relationship with Fe oxides and Fe-bound organic carbon (Fe-OC) remains unclear. We characterized changes in the Fe phase, Fe-OC, Fe-oxidizing bacteria (FeOB), and Fe-reducing bacteria (FeRB) in the subsoil and analyzed the microbial mechanism underlying Fe-OC changes in alpine grassland by constructing a composite structural equation model (SEM). We found that the Fe(III) content consistently exceeded that of Fe(II). Among the three types of Fe oxides, organically complex Fe (Fe-p) decreased from 2.54 to 2.30 gkg(-1), whereas the opposite trend was observed for poorly crystalline Fe (Fe-o). The Fe-OC content also decreased (from 10.31 to 9.47 gkg(-1); p < 0.05). Fe-cycling microorganisms were markedly affected by the thawing of frozen soil (except FeRB). Fe-p and Feo directly affected changes in Fe-OC. Soil moisture (SM) and FeOB were significant indirect factors affecting Fe-OC changes. Freeze-thaw changes in the subsoil of alpine grassland in Central Asia significantly affected FeOB and Fe oxides, thus affecting the Fe-OC content. To the best of our knowledge, this was the first study to examine the influence of Fe-cycling microorganisms on the Fe phase and Fe-OC in the soil of alpine grassland in Central Asia. Overall, our findings provide scientific clues for exploring the biogeochemical cycle process in future climate change.

Large amounts of carbon sequestered in permafrost on the Tibetan Plateau (TP) are becoming vulnerable to microbial decomposition in a warming world. However, knowledge about how the responsible microbial community responds to warming-induced permafrost thaw on the TP is still limited. This study aimed to conduct a comprehensive comparison of the microbial communities and their functional potential in the active layer of thawing permafrost on the TP. We found that the microbial communities were diverse and varied across soil profiles. The microbial diversity declined and the relative abundance of Chloroflexi, Bacteroidetes, Euryarchaeota, and Bathyarchaeota significantly increased with permafrost thawing. Moreover, warming reduced the similarity and stability of active layer microbial communities. The high-throughput qPCR results showed that the abundance of functional genes involved in liable carbon degradation and methanogenesis increased with permafrost thawing. Notably, the significantly increased mcrA gene abundance and the higher methanogens to methanotrophs ratio implied enhanced methanogenic activities during permafrost thawing. Overall, the composition and functional potentials of the active layer microbial community in the Tibetan permafrost region are susceptible to warming. These changes in the responsible microbial community may accelerate carbon degradation, particularly in the methane releases from alpine permafrost ecosystems on the TP. Warming-induced permafrost thawing increased the abundance of anaerobic microorganisms and functional genes involved in labile carbon degradation and methane cycles, which could accelerate soil carbon degradation on TP.

Permafrost thaw could induce substantial carbon (C) emissions to the atmosphere, and thus trigger a positive feedback to climate warming. As the engine of biogeochemical cycling, soil microorganisms exert a critical role in mediating the direction and strength of permafrost C-climate feedback. However, our understanding about the impacts of thermokarst (abrupt permafrost thaw) on microbial structure and function remains limited. Here we employed metagenomic sequencing to analyze changes in topsoil (0-15 cm) microbial communities and functional genes along a permafrost thaw sequence (1, 10, and 16 years since permafrost collapse) on the Tibetan Plateau. By combining laboratory incubation and a two-pool model, we then explored changes in soil labile and stable C decomposition along the thaw sequence. Our results showed that topsoil microbial alpha-diversity decreased, while the community structure and functional gene abundance did not exhibit any significant change at the early stage of collapse (1 year since collapse) relative to non-collapsed control. However, as the time since the collapse increased, both the topsoil microbial community structure and functional genes differed from the control. Abundances of functional genes involved in labile C degradation decreased while those for stable C degradation increased at the late stage of collapse (16 years since collapse), largely driven by changes in substrate properties along the thaw sequence. Accordingly, faster stable C decomposition occurred at the late stage of collapse compared to the control, which was associated with the increase in relative abundance of functional genes for stable C degradation. These results suggest that upland thermokarst alters microbial structure and function, particularly enhances soil stable C decomposition by modulating microbial functional genes, which could reinforce a warmer climate over the decadal timescale.

Boreal forests in permafrost zone store significant quantities of carbon that are readily threatened by increases in fire frequency and temperature due to climate change. Soil carbon is primarily released by microbial decomposition that is sensitive to environmental conditions. Under increasing disturbances of wildfire, there is a pressing need to understand interactions between wildfires and microbial communities, thereby to predict soil carbon dynamics. Using Illumina MiSeq sequencing of bacterial 16S rDNA and GeoChip 5.0K, we compared bacterial communities and their potential functions at surface and near-surface permafrost layers across a chronosequence ( > 100 years) of burned forests in a continuous permafrost zone. Postfire soils in the Yukon and the Northwest Territories, Canada, showed a marked increase in active layer thickness. Our results showed that soil bacterial community compositions and potential functions altered in 3-year postfire forest (Fire(3)) comparing to the unburned forests. The relative abundance of Ktedonobacteria (Chloroflexi) was higher in Fire(3) surface soils, while Alphaproteobacteria and Betaproteobacteria (Proteobacteria) were more abundant in unburned ones. Approximately 37% of the variation in community composition can be explained by abiotic variables, whereas only 2% by biotic variables. Potential functional genes, particularly for carbon degradation and anammox, appeared more frequent in Fire 3 than in unburned soils. Variations in functional gene pools were mainly driven by environmental factors (39%) and bacterial communities (20%; at phylum level). Unexpectedly, wildfire solely altered bacterial communities and their functional potentials of the surface layers, not the near-permafrost layers. Overall, the response of bacterial community compositions and functions to wildfire and the environment provides insights to re-evaluate the role of bacteria in decomposition.