An anomalous warm weather event in the Antarctic McMurdo Dry Valleys on 18 March 2022 created an opportunity to characterize soil biota communities most sensitive to freeze-thaw stress. This event caused unseasonal melt within Taylor Valley, activating stream water and microbial mats around Canada Stream. Liquid water availability in this polar desert is a driver of soil biota distribution and activity. Because climate change impacts hydrological regimes, we aimed to determine the effect on soil communities. We sampled soils identified from this event that experienced thaw, nearby hyper-arid areas, and wetted areas that did not experience thaw to compare soil bacterial and invertebrate communities. Areas that exhibited evidence of freeze-thaw supported the highest live and dead nematode counts and were composed of soil taxa from hyper-arid landscapes and wetted areas. They received water inputs from snowpacks, hyporheic water, or glacial melt, contributing to community differences associated with organic matter and salinity gradients. Inundated soils had higher organic matter and lower conductivity (p < .02) and hosted the most diverse microbial and invertebrate communities on average. Our findings suggest that as liquid water becomes more available under predicted climate change, soil communities adapted to the hyper-arid landscape will shift toward diverse, wetted soil communities.

Evaluating petroleum contamination risk and implementing remedial measures in agricultural soil rely on indicators such as soil metal(loid)s and microbiome alterations. However, the response of these indicators to petroleum contamination remains under-investigated. The present study investigated the soil physicochemical features, metal(loid)s, microbial communities and networks, and phospholipid fatty acids (PLFAs) community structures in soil samples collected from long-(LC) and short-term (SC) petroleum-contaminated oil fields. The results showed that petroleum contamination increased the levels of soil total petroleum hydrocarbon, carbon, nitrogen, sulfur, phosphorus, calcium, copper, manganese, lead, and zinc, and decreased soil pH, microbial biomass, bacterial and fungal diversity. Petroleum led to a rise in the abundances of soil Proteobacteria, Ascomycota, Oleibacter, and Fusarium. Network analyses showed that the number of network links (Control vs. SC, LC = 1181 vs. 700, 1021), nodes (Control vs. SC, LC = 90 vs. 71, 83) and average degree (Control vs. SC, LC = 26.244 vs. 19.718, 24.602) recovered as the duration of contamination increased. Petroleum contamination also reduced the concentration of soil PLFAs, especially bacterial. These results demonstrate that brief exposure to high levels of petroleum contamination alters the physicochemical characteristics of the soil as well as the composition of soil metal(loid)s and microorganisms, leading to a less diverse soil microbial network that is more susceptible to damage. Future research should focus on the culturable microbiome of soil under petroleum contamination to provide a theoretical basis for further remediation. (c) 2025 The Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V.

Lead (Pb), a prevalent heavy metal contaminant in aquatic environments, has complex effects on the gut microbiome function of aquatic animals. In this study, metagenomic analysis of Bufo gargarizans tadpoles was carried out following Pb exposure. Moreover, histological analysis was performed on the intestines. The results showed that Pb exposure induced histological damage to the intestinal epithelium. Significant differences in microbial abundance and function were detected in the 200 mu g/L Pb group compared to the control group. Specifically, an increase in Bosea and Klebsiella was noted at 200 mu g/L Pb, which potentially could induce inflammation in tadpoles. Notably, the decrease in the abundance of glycoside hydrolases subsequent to exposure to 200 mu g/L Pb is likely to attenuate carbohydrate metabolism. Furthermore, increased fluoroquinolone-related antibiotic resistance genes (ARGs), phenolic-related ARGs, and iron uptake systems following 200 mu g/L Pb exposure might heighten the disease risk for tadpoles. These discoveries augment our comprehension of the influences of Pb on the intestinal well-being of amphibians and offer valuable insights for further assessment of the ecological risks that Pb poses to amphibians.

Revealing regional-scale differences in microbial community structure and metabolic strategies across different land use types and soil types and how these differences relate to soil carbon (C) cycling function is crucial for understanding the mechanisms of soil organic carbon (SOC) sequestration in agroecosystems. However, our understanding of these knowledge still remains unclear. Here, we employed metagenomic methods to explore differences in microbial community structure, functional potential, and ecological strategies in calcareous soil and red soil, as well as the relationships among these factors and SOC stocks. The results showed that the bacterial absolute abundance and diversity were higher and the fungal absolute abundance and diversity were lower in calcareous soil than in red soil. This may be attributed to stochastic processes dominated the assembly of bacterial and fungal communities in calcareous soil and red soil, respectively. This in turn was closely related to soil pH and Ca2 + content. Linear discriminant analysis showed that genes related to microbial growth and reproduction (e.g., amino acid biosynthesis, central carbon metabolism, and membrane transport) were enriched in calcareous soil. While genes related to stress tolerance (e.g., bacterial chemotaxis, DNA damage repair, biofilm formation) were enriched in red soil. The great difference in soil properties between calcareous soil and red soil may be the cause of this result. Compared with red soil, the higher soil pH, SOC, and calcium and magnesium content in calcareous soil increased the bacterial absolute abundance and diversity, thus increasing the SOC sequestration potential of microorganisms, but also increased the decomposition of organic carbon by fungi, thus increasing the SOC loss potential. However, the bacterial absolute abundance and diversity were much higher than that of fungi. Therefore, soil carbon sequestration potential was still greater than its loss potential in karst agroecosystems. Agricultural disturbance intensity may be the main factor affecting these relationships. Overall, these findings advance our understanding of how soil microbial metabolic processes are related to SOC sequestration.

The environmental prevalence of the tire wear-derived emerging pollutant N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine-quinone (6PPD-Q) has increasingly raised public concern. However, knowledge of the adverse effects of 6PPD-Q on soil fauna is scarce. In this study, we elucidated its impact on soil fauna, specifically on the earthworm Eisenia fetida. Our investigation encompassed phenotypic, multi-omics, and microbiota analyses to assess earthworm responses to a gradient of 6PPD-Q contamination (10, 100, 1000, and 5000 mu g/kg dw soil). Post-28-day exposure, 6PPD-Q was found to bioaccumulate in earthworms, triggering reactive oxygen species production and consequent oxidative damage to coelomic and intestinal tissues. Transcriptomic and metabolomic profiling revealed several physiological perturbations, including inflammation, immune dysfunction, metabolic imbalances, and genetic toxicity. Moreover, 6PPD-Q perturbed the intestinal microbiota, with high dosages significantly suppressing microbial functions linked to metabolism and information processing (P < 0.05). These alterations were accompanied by increased mortality and weight loss in the earthworms. Specifically, at an environmental concentration of 6PPD-Q (1000 mu g/kg), we observed a substantial reduction in survival rate and physiological disruptions. This study provides important insights into the environmental hazards of 6PPD-Q to soil biota and reveals the underlying toxicological mechanisms, underscoring the need for further research to mitigate its ecological footprint.

The efficacy and environmental effects of using metal-organic frameworks (MOFs) for the remediation of arsenic (As)-contaminated soil, a significant global problem, remain unclear. This study evaluated MIL-88A(Fe) and MIL101(Fe) coupled with ramie (Boehmeria nivea L.) for As-contaminated soil remediation. A soil incubation experiment revealed that 10,000 mg kg-1 MIL-88A(Fe) and MIL-101(Fe) reduced As bioavailability by 77.1 % and 65.0 %, respectively, and increased residual As fractions by 8 % and 7 % through Fe-As co-precipitation and adsorption. Divergent environmental effects emerged, which were probably due to differences in the framework structures and organic ligands: MIL-88A(Fe) improved soil urease activity and bacterial diversity, whereas MIL101(Fe) induced acidification (decreasing soil pH by 25 %) and salinity stress (elevating soil electrical conductivity (EC) by 946 %). A pot experiment showed that 1000 mg kg-1 MOFs enhanced ramie biomass via As immobilization, whereas 5000 mg kg-1 MIL-101(Fe) suppressed growth because exposure to the MOF caused root damage. The MOFs enriched Pseudomonas (As-oxidizing) and suppressed Dokdonella (pathogenic), enhancing plant resilience. Notably, 100 mg kg-1 MIL-101(Fe) increased As translocation to stems (14.8 %) and leaves (27.6 %). Hydroponic analyses showed that 50-200 mg L-1 MIL-101(Fe) mitigated As-induced chlorophyll degradation (elevating Soil and plant analyzer development (SPAD) by 12.8 %-28.3 %), whereas 500 and 1000 mg L-1 induced oxidative stress (reducing SPAD by 4.2 %-10.7 %). This study provides valuable insights into using Fe-based MOFs in soil remediation and highlights their beneficial and harmful effects.

Tetracycline (TC) is effectively used antibiotic in animal husbandry and healthcare, has damaged soil ecosystems due to its misuse and residues in the soil environment. Therefore, the main objective of this study was to abate TC in hyphosphere soil by inoculating soil with arbuscular mycorrhizal fungi (AMF) and to explore its potential mechanisms. The results showed that under TC stress, inoculation with AMF reduced the contents of soil organic carbon and total nitrogen, and increased the activities of beta-glucosidase and urease in hyphosphere soil. The relative abundance of bacterial genera such as Pseudomaricurvus in the hyphosphere soil increased significantly after AMF inoculation. In addition, four bacterial genera, Cellulosimicrobium, Roseibium, Citromicrobium, and Hephaestia, were uniquely present in AMF-inoculated soil, and the functional genes Unigene456231 and Unigene565663 were significantly enriched in the hyphosphere soil. This suggests that the reshaping of the bacterial community and the enrichment of functional genes in the hyphosphere soil led to changes in the bacterial community's functions, which promoted the gradual abatement of residual TC in the soil. It should be noted that this study was solely based on a single pot experiment, and its conclusions may have certain limitations in broader ecological application scenarios. Subsequent studies will further investigate the remediation effects under different environmental factors and field trials. This study provides new insights into the use of AMF as a biological agent for the remediation of TC-contaminated soils, offering new perspectives for promoting sustainable agricultural development.

Understanding how land cover and seasonal variations influence soil microbial communities and nutrient cycling is crucial for sustainable land management in tropical forests. However, such investigations are limited in Madagascar's tropical ecosystems. This study investigated the impacts of land cover types and seasonal variations on soil properties and microbial communities in the tropical forest region of Andasibe, Madagascar. Soil samples were collected from four land cover types-tree fallow (TSA), shrub fallow (SSA), eucalyptus forest (EUC), and degraded land (TM)-across three seasonal periods: the dry season, the start of the rainy season, and the end of the rainy season. Both land cover and sampling season affected soil pH and available P, whereas total nitrogen, soil organic carbon, and the C/N ratio were affected only by land cover. The soil organic carbon and total nitrogen concentrations were greater in TM. NextSeq sequencing of the 16S rRNA gene and ITS regions of the nuclear rRNA operon revealed distinct microbial community compositions across land covers, with greater diversity in the TSA and SSA. Bacteria are more sensitive to seasonal changes than are fungi, with phosphate-solubilizing (gcd) and phosphate-mineralizing (phoD) genes being more abundant in the rainy season, emphasizing the role of microbes in nutrient availability under different climatic conditions. Principal component analysis highlighted SSA as a hotspot for microbial activity, reinforcing the potential of shrub ecosystems in soil restoration. These findings reveal strong land cover and seasonal effects on soil microbial functions, with implications for nutrient cycling, ecosystem resilience, and sustainable land management in tropical forest landscapes.

Arbuscular mycorrhizal (AM) fungi are important plant symbionts that provide plants with nutrients and water as well as support plant defences against pests and disease. Consequently, they present a promising alternative to using environmentally damaging and costly fertilisers and pesticides in agricultural systems. However, our limited understanding of how agricultural practices impact AM fungal diversity and functions is a key impediment to using them effectively in agriculture. We assessed how organic and conventional agricultural management systems shaped AM fungal communities. We also investigated how AM fungal communities derived from these agricultural management systems affected crop biomass and development. Six soil samples from five organically and five conventionally managed agricultural sites were used to cultivate Sorghum bicolor. Plant growth, plant nutrient concentrations and AM fungal colonisation rates were analysed alongside DNA metabarcoding of community composition. We observed that soil from conventional agricultural fields resulted in a pronounced reduction in sorghum biomass (-53.6%) and a significant delay in flowering compared to plants grown without AM fungi. Sorghum biomass was also reduced with soil from the organic system, but to a lesser extent (-30%) and without a delay in flowering. Organic systems were associated with a large proportion of AM fungal taxa (50.5% of VTs) not found in conventional systems, including Diversispora (r(2) = 0.09, p < 0.001), Archaeospora (r(2) = 0.07, p < 0.001) and Glomus (r(2) = 0.25, p < 0.001) spp., but also shared a large proportion of taxa with conventional systems (42.3% of VTs). Conventional systems had relatively few unique taxa (7.2% of VTs). Our results suggest that conventional agricultural practices selected against AM fungi that were, in this context, more beneficial for host plants. In contrast, organic management practices mitigate this negative effect, likely due to the presence of specific key AM fungal taxa. However, this mitigation is only partial, as less beneficial AM fungal taxa still persist, probably due to abiotic factors associated with agricultural management and the sensitivity of AM fungi to these factors. This persistence explains why the effect is not entirely eradicated. Read the free Plain Language Summary for this article on the Journal blog.

Root-knot nematodes (RKN) cause extensive damage to grapevine cultivars. RKN-resistant grapevine rootstocks remain vulnerable to biotic and abiotic stresses. This study aimed to determine the influence of composted animal manures (CAMs) [chicken manure (CM), cow manure (CowM), and sheep manure (SM)] with or without plant growth-promoting rhizobacteria (PGPR) on the population of Meloidogyne incognita, free-living nematodes (FLNs) and predaceous nematodes (PNs) residing in the soils of vineyard cultivars (Flame, Superior and Prime). The nematodes were isolated from grapevine roots and rhizosphere soils, then the absolute frequency of occurrence (FO), relative FO, prominence value (PV), and population density (PD) were assessed. The impact of CAMs and PGPR on the growth parameters, fruit output, and quality of three grapevine varieties was subsequently evaluated. Eight treatments included a control without CAMs or PGPR amendments, the CAMs alone, or CAM treatments combined with PGPR. The results showed that FLNs and PNs were more abundant in Prime than Flame or Superior cultivars when poor sandy loam soils were supplied with CAMs. Among all tested manures, CM was the best treatment as a nematicide. This was evident from the decreased numbers of M. incognita and increased numbers of FLNs and PNs in grapevine fields. Compared to the soil-applied oxamyl (a systemic nematicide), which was efficiently suppressive on M. incognita for two months, CM significantly (P < 0.05) decreased PD of the phytonematodes for five months, improved soil structure and enhanced the soil biological activities. There were significant (P < 0.05) increases in the number of leaves/vines by 79.9, 78.8, and 73.1%; and total fruit weight/vine by 76.9, 75.0, and 73.0% in Flame, Superior, and Prime varieties, respectively, compared to untreated vines. Regardless of the cultivar, soils amended with CM + PGPR achieved the lowest number of M. incognita among all other treatments, followed by SM + PGPR and CowM + PGPR. It was concluded that CAMs amendment, mainly CM, along with PGPR in poor sandy soils of temperate areas, is considered a sustainable approach for reducing parasitic nematodes and improving agricultural management.