Robusta coffee, a vital cash crop for Vietnamese smallholders, significantly contributes to the national economy. Vietnam is the largest exporter of Robusta coffee, supplying 53% of the global market. However, this success has come at a cost. Decades of intensive Robusta coffee cultivation in Vietnam have led to severe soil acidification and biodiversity loss, favoring soil-borne pathogens. There is a lack of literature analyzing how intensive management causes soil acidification, advances the spread of soilborne pathogens, and the application of soil amendments to address these issues. Therefore, this review explores the causes of acidification, pathogen proliferation, and sustainable amendments like lime and biochar to mitigate these effects. The study synthesizes findings from studies on soil acidification, soil-borne pathogen dynamics, and sustainable soil amendments in Robusta coffee systems. We found that the overuse of nitrogen-based chemical fertilizers to grow coffee is the primary driver of soil acidification, consequently increasing soilborne diseases and the severity of plant diseases. Additionally, the effects of soil amendments as a sustainable solution to reduce soil acidity, enhance soil health, and better control soilborne pathogens. The implementation of sustainable coffee farming systems is strongly recommended to meet the increased demand for safe and green products worldwide. Locally available resources (lime, biochar, and agricultural wastes) present immediate solutions, but urgent action is required to prevent irreversible damage. However, the effects of amendments significantly vary in field conditions, suggesting that further studies should be conducted to address these challenges and promote sustainability.

This study investigated the sub-lethal effects of four commercial fungicides-two foliar (Amistar (R) Xtra and Mirador (R)) and two ear fungicides (Prosaro (R) and Icarus (R))-applied alone and in combination to wheat crops on caged earthworms (Eisenia fetida). We measured biomarkers that included detoxification responses (glutathione S-transferase, GST), oxidative stress levels (lipid peroxidation, LPO, and catalase, CAT), DNA damage (comet assay), energy reserves (lactate dehydrogenase, LDH), and immune response (lysozyme activity, LYS). The absence of significant differences in catalase and lipid peroxidation levels suggested no oxidative stress due to fungicide exposure. However, the foliar fungicide Amistar (R) Xtra induced the highest GST activity and DNA fragmentation, suggesting synergistic effects between its active ingredients and undisclosed co-formulants. Similar effects observed with the Amistar (R) Xtra-Prosaro (R) mixture confirmed the greater toxicity of Amistar (R) Xtra. This study provides novel insights into the sub-lethal effects of single and combined commercial fungicides on a standard toxicity test organism, shedding light on the ecological implications of fungicide use in agroecosystems and reinforcing the need for pesticide reduction.

Sargassum horneri which seasonally enters East Asian waters frequently leads to negative economic consequences despite its ecological importance. It damages vessel engines and fishing gear and releases hydrogen sulfide and ammonia as it rots. Traditionally, seaweed drifts have been used as fertilizers in certain coastal areas in Korea, but there have been no scientific reports regarding this kind of application of seaweeds. Hence, this study attempted to use Sargassum biomass as a soil amendment by monitoring soil properties and microbiome changes and soybean growth in Sargassum-added soil. Our results suggested that the addition of S. horneri biomass to soil improved soil physicochemical properties such as cation exchange capacity (CEC) levels that represents soil's capacity to retain cations leading to more soil fertility. As (max. value 24.97 mg kg(-1)) and Cd (max. value 0.58 mg kg(-1)) concentration increases were notable in the soil, but all the metal levels were well below the Korean soil quality standards for agricultural uses except for As (25 mg kg(-1) limit) which is just a little lower than the limit. Diversity index results indicated that fungal and bacterial diversities were affected by the amount of Sargassum added. Our study demonstrated that seasonal drifts of S. horneri could be used as an excellent soil amendment. Moreover, Glycine max (L.) Merr. cultivation experiments suggested that 4% of S. horneri was the optimal amount to enhance soybean growth in agricultural practice.

Pesticides and fertilizers used in agriculture can negatively affect the soil, increasing its toxicity. In this work, a battery of whole-cell bacterial lux-biosensors based on the E. coli MG1655 strain with various inducible promoters, as well as the natural luminous Vibrio aquamarinus VKPM B-11245 strain, were used to assess the effects of agrochemical soil treatments. The advantages of using biosensors are sensitivity, specificity, low cost of analysis, and the ability to assess the total effect of toxicants on a living cell and the type of their toxic effect. Using the V. aquamarinus VKPM B-11245 strain, the synergistic effect of combined soil treatment with pesticides and mineral fertilizers was shown, which led to an increase in the overall (integral) toxicity of soils higher than that of the individual application of substances. Several probable implementation mechanisms of agrochemical toxic effects have been discovered. DNA damage caused by both SOS response induction and alkylation, oxidative stress due to increased superoxide levels, and damage to cellular proteins and membranes are among them. Thus, the usage of biosensors makes it possible to assess the cumulative effect of various toxicants on living organisms without using expensive chemical analyses.

The global industrialization and modernization have witnessed a rapid progress made in agricultural production, along with the issue of soil heavy metal (HM) pollution, which has posed severe threats to soil quality, crop yield, and human health. Phytoremediation, as an alternative to physical and chemical methods, offers a more costeffective, eco-friendly, and aesthetically appealing means for in -situ remediation. Despite its advantages, traditional phytoremediation faces challenges, including variable soil physicochemical properties, the bioavailability of HMs, and the slow growth and limited biomass of plants used for remediation. This study presents a critical overview of the predominant plant -based HM remediation strategies. It expounds upon the mechanisms of plant absorption, translocation, accumulation, and detoxification of HMs. Moreover, the advancements and practical applications of phyto-combined remediation strategies, such as the addition of exogenous substances, genetic modification of plants, enhancement by rhizosphere microorganisms, and intensification of agricultural technologies, are synthesized. In addition, this paper also emphasizes the economic and practical feasibility of some strategies, proposing solutions to extant challenges in traditional phytoremediation. It advocates for the development of cost-effective, minimally polluting, and biocompatible exogenous substances, along with the careful selection and application of hyperaccumulating plants. We further delineate specific future research avenues, such as refining genetic engineering techniques to avoid adverse impacts on plant growth and the ecosystem, and tailoring phyto-combined strategies to diverse soil types and HM pollutants. These proposed directions aim to enhance the practical application of phytoremediation and its integration into a broader remediation framework, thereby addressing the urgent need for sustainable soil decontamination and protection of ecological and human health.

Bacterial secondary metabolites serve as an important source of molecules for drug discovery. They also play an important function in mediating the interactions of microbial producers with their living environment and surrounding organisms. However, little is known about the genetic novelty, distribution, and community-level impacts of soil bacterial biosynthetic potential on a large geographic scale. Here, we constructed the first catalog of 11,149 biosynthetic gene clusters (BGCs) from agricultural soils across China and unearthed hidden biosynthetic potential for new natural product discovery from the not-yet-cultivated soil bacteria. Notably, we revealed soil pH as the strongest environmental driver of BGC biogeography and predicted that soil acidification and global climate change could damage the biosynthetic potential of the soil microbiome. The co-occurrence network of bacterial genomes revealed two BGC-rich species, i.e., Nocardia niigatensis from Actinobacteriota and PSRF01 from Acidobacteriota, as the module hub and connector, respectively, indicating their keystone positions in the soil microbial communities. We also uncovered a dominant role of BGC-inferred biotic interactions over environmental drivers in structuring the soil microbiome. Overall, this study achieved novel insights into the BGC landscape in agricultural soils of China, substantially expanding our understanding of the diversity and novelty of bacterial secondary metabolism and the potential role of secondary metabolites in microbiota assembly. IMPORTANCE Bacterial secondary metabolites not only serve as the foundation for numerous therapeutics (e.g., antibiotics and anticancer drugs), but they also play critical ecological roles in mediating microbial interactions (e.g., competition and communication). However, our knowledge of bacterial secondary metabolism is limited to only a small fraction of cultured strains, thus restricting our comprehensive understanding of their diversity, novelty, and potential ecological roles in soil ecosystems. Here, we used culture-independent metagenomics to explore biosynthetic potentials in agricultural soils of China. Our analyses revealed a high degree of genetic diversity and novelty within biosynthetic gene clusters in agricultural soil environments, offering valuable insights for biochemists seeking to synthesize novel bioactive products. Furthermore, we uncovered the pivotal role of BGC-rich species in microbial communities and the significant relationship between BGC richness and microbial phylogenetic turnover. This information emphasizes the importance of biosynthetic potential in the assembly of microbial communities.

Heavy metal (HM) poisoning of agricultural soils poses a serious risk to plant life, human health, and global food supply. When HM levels in agricultural soils get to dangerous levels, it harms crop health and yield. Chromium (Cr), arsenic (As), nickel (Ni), cadmium (Cd), lead (Pb), mercury (Hg), zinc (Zn), and copper (Cu) are the main heavy metals. The environment contains these metals in varying degrees, such as in soil, food, water, and even the air. These substances damage plants and alter soil characteristics, which lowers crop yield. Crop types, growing circumstances, elemental toxicity, developmental stage, soil physical and chemical properties, and the presence and bioavailability of heavy metals (HMs) in the soil solution are some of the factors affecting the amount of HM toxicity in crops. By interfering with the normal structure and function of cellular components, HMs can impede various metabolic and developmental processes. Humans are exposed to numerous serious diseases by consuming these affected plant products. Exposure to certain metals can harm the kidneys, brain, intestines, lungs, liver, and other organs of the human body. This review assesses (1) contamination of heavy metals in soils through different sources, like anthropogenic and natural; (2) the effect on microorganisms and the chemical and physical properties of soil; (3) the effect on plants as well as crop production; and (4) entering the food chain and associated hazards to human health. Lastly, we identified certain research gaps and suggested further study. If people want to feel safe in their surroundings, there needs to be stringent regulation of the release of heavy metals into the environment.

Soil pollution by heavy metals can cause continuing damage to ecosystems and the human body. In this study, we collected nine fresh topsoil samples and 18 maize samples (including nine leaf samples and nine corn samples) from agricultural soils in the Baiyin mining areas. The results showed that the order of heavy metal concentrations (mg/kg) in agricultural soils was as follows: Zn (377.40) > Pb (125.06) > Cu (75.06) > Ni (28.29) > Cd (5.46) > Hg (0.37). Cd, Cu, Zn, and Pb exceeded the Chinese risk limit for agricultural soil pollution. The average the pollution load index (4.39) was greater than 3, indicating a heavy contamination level. The element that contributed the most to contamination and high ecological risk in soil was Cd. Principal component analysis (PCA) and Pearson's correlation analysis indicated that the sources of Ni, Cd, Cu, and Zn in the soil were primarily mixed, involving both industrial and agricultural activities, whereas the sources of Hg and Pb included both industrial and transportation activities. Adults and children are not likely to experience non-carcinogenic impacts from the soil in this region. Nonetheless, it was important to be aware of the elevated cancer risk presented by Cd, Pb, and especially Ni. The exceedance rates of Cd and Pb in corn were 66.67% and 33.3%, respectively. The results of this research provide data to improve soil protection, human health monitoring, and crop management in the Baiyin district.

In cold regions, climate change is expected to result in warmer winter temperatures and increased temperature variability. Coupled with changing precipitation regimes, these changes can decrease soil insulation by reducing snow cover, exposing soils to colder temperatures and more frequent and extensive soil freezing and thawing. Freeze-thaw events can exert an important control over winter soil processes and the cycling of nitrogen (N), with consequences for soil health, nitrous oxide (N2O) emissions, and nearby water quality. These impacts are especially important for agricultural soils and practices in cold regions. We conducted a lysimeter experiment to assess the effects of winter pulsed warming, soil texture, and snow cover on N cycling in agricultural soils. We monitored the subsurface soil temperature, moisture, and porewater geochemistry together with air temperature, precipitation, and N2O fluxes in four agricultural field-controlled lysimeter systems (surface area of 1 m(2) and depth of 1.5 m) at the University of Guelph's Elora Research Station over one winter (December 2020 to April 2021). The lysimeters featured two soil types (loamy sand and silt loam) which were managed under a corn-soybean-wheat rotation with cover crops. Additionally, ceramic infrared heaters located above two of the lysimeters were turned on after each snowfall event to melt the snow and then turned off to mimic snow-free winter conditions with increased soil freezing. Porewater samples collected from five depths in the lysimeters were analyzed for total dissolved nitrogen (TDN), nitrate (NO3 (-)), nitrite (NO2 (-)), and ammonium (NH4 (+)). N2O fluxes were measured using automated soil gas chambers installed on each lysimeter. The results from the snow removed lysimeters were compared to those of lysimeters without heaters (with snow). As expected, the removal of the insulating snow cover resulted in more intense soil freeze-thaw events, causing increased dissolved N loss from the lysimeter systems as N2O (from the silt loam system) and via NO3 (-) leaching (from the loamy sand system). In the silt loam lysimeter, we attribute the freeze thaw-enhanced N2O fluxes to de novo processes rather than gas build up and release. In the loamy sand lysimeter, we attribute the increased NO3 (-) leaching to the larger pore size and therefore lower water retention capacity of this soil type. Overall, our study illustrates the important role of winter snow cover dynamics and soil freezing in modulating the coupled responses of soil moisture, temperature, and N cycling.