Evaluating petroleum contamination risk and implementing remedial measures in agricultural soil rely on indicators such as soil metal(loid)s and microbiome alterations. However, the response of these indicators to petroleum contamination remains under-investigated. The present study investigated the soil physicochemical features, metal(loid)s, microbial communities and networks, and phospholipid fatty acids (PLFAs) community structures in soil samples collected from long-(LC) and short-term (SC) petroleum-contaminated oil fields. The results showed that petroleum contamination increased the levels of soil total petroleum hydrocarbon, carbon, nitrogen, sulfur, phosphorus, calcium, copper, manganese, lead, and zinc, and decreased soil pH, microbial biomass, bacterial and fungal diversity. Petroleum led to a rise in the abundances of soil Proteobacteria, Ascomycota, Oleibacter, and Fusarium. Network analyses showed that the number of network links (Control vs. SC, LC = 1181 vs. 700, 1021), nodes (Control vs. SC, LC = 90 vs. 71, 83) and average degree (Control vs. SC, LC = 26.244 vs. 19.718, 24.602) recovered as the duration of contamination increased. Petroleum contamination also reduced the concentration of soil PLFAs, especially bacterial. These results demonstrate that brief exposure to high levels of petroleum contamination alters the physicochemical characteristics of the soil as well as the composition of soil metal(loid)s and microorganisms, leading to a less diverse soil microbial network that is more susceptible to damage. Future research should focus on the culturable microbiome of soil under petroleum contamination to provide a theoretical basis for further remediation. (c) 2025 The Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V.

Background and aimsFrequent extreme weather poses significant threats to agricultural production and biological communities. Understanding the microbiological mechanisms that determine plant health under warming fluctuations (including short-term warming (WM, 45 degrees C for lasting 10 days) and recovery from warming (RE, the end of warming and returning to 25 degrees C for lasting 10 days)) is crucial for achieving sustainable agricultural development.MethodsHere, we explored the effects of warming fluctuations on the plant health index (PHI) and on the bacterial and fungal communities in both bulk soil and rhizosphere.ResultsWarming fluctuations did not change the rhizosphere bacterial or fungal alpha diversity but did affect the community structure and composition in both the bulk soil and rhizosphere. Moreover, warming fluctuations altered the stability and complexity of the bacterial and fungal networks, and the changes exhibited obvious differences between the bulk soil and rhizosphere. Bacterial and bulk soil fungal taxa enhanced their cooperation to adapt to WM, while rhizosphere fungal taxa became more competitive. In addition, warming fluctuations reduced the wheat health index and caused irreversible damage. Biotic factors, particularly core taxa such as Nocardioidaceae, Trueperaceae, Microbacteriaceae, and 67-14 of bacteria, as well as Diversisporaceae, Glomeraceae, Entolomataceae, and Orbiliales of fungi, have emerged as the main driving forces affecting wheat health. These core taxa can directly influence wheat health or indirectly regulate network complexity and competition among taxa.ConclusionsOur study underscores the significance of core taxa in modulating soil microbiome dynamics and safeguarding plant health, offering valuable insights and strategies for enhancing crop productivity and fostering sustainable agricultural development amidst increasingly frequent extreme weather events.

Microorganisms play a vital role in restoring soil multifunctionality and rejuvenating degraded meadows. The availability of microbial resources, such as carbon, nitrogen, and phosphorus, often hinders this process. However, there is limited information on whether grass restoration can alleviate microbial resource limitations in damaged slopes of high-altitude regions. This study focused on alpine bare land impacted by engineering activities, with the goal of using grass seeds to improve soil resource availability and multifunctionality. High- throughput sequencing and enzyme stoichiometry (vector analyses) were employed to analyze microbial community composition and assess resource limitations. Our findings suggested that soil carbon, nitrogen, and phosphorus contents were low, ranging from 7.67 to 12.6 g kg- 1 for carbon, 0.61 to 0.98 g kg-1,for nitrogen, and 0.65 to 0.78 g kg-1for phosphorus. Nevertheless, the standardized scores for high yield and resource acquisition strategies remained at 0.26 and 1.36 in the four groups, which were lower than those of the stress tolerance strategy. Microorganisms primarily employed the stress tolerance strategy, focusing on repairing injured cells rather than promoting cell growth, which suggests that microbial growth and metabolism were only marginally enhanced. Because of this strategy's limited impact on enhancing microbial community diversity and fostering a co-occurrence network, the resultant levels remained comparable to those observed in degraded meadows. In this case, microbial resource limitations persisted, with phosphorus remaining a constraint. Consequently, grass restoration alone offered limited relief for microbial resource limitations in alpine meadows, underscoring the challenges of solely relying on grass seeds to recover damaged alpine ecosystems.

Clubroot (Plasmodiophora brassicae) is an important soilborne disease that causes severe damage to cruciferous crops in China. This study aims to compare the differences in chemical properties and microbiomes between healthy and clubroot-diseased soils. To reveal the difference, we measured soil chemical properties and microbial communities by sequencing 18S and 16S rRNA amplicons. The available potassium in the diseased soils was higher than in the healthy soils. The fungal diversity in the healthy soils was significantly higher than in the diseased soils. Ascomycota and Proteobacteria were the most dominant fungal phylum and bacteria phylum in all soil samples, respectively. Plant-beneficial microorganisms, such as Chaetomium and Sphingomonas, were more abundant in the healthy soils than in the diseased soils. Co-occurrence network analysis found that the healthy soil networks were more complex and stable than the diseased soils. The link number, network density, and clustering coefficient of the healthy soil networks were higher than those of the diseased soil networks. Our results indicate that the microbial community diversity and network structure of the clubroot-diseased soils were different from those of the healthy soils. This study is of great significance in exploring the biological control strategies of clubroot disease.

Under the background of climate change, freeze-thaw patterns tend to be turbulent: ecosystem function processes and their mutual feedback mechanisms with microorganisms in sensitive areas around the world are currently a hot topic of research. We studied changes of soil properties in alpine wetlands located in arid areas of Central Asia during the seasonal freeze-thaw period (which included an initial freezing period, a deep freezing period, and a thawing period), and analyzed changes in soil bacterial community diversity, structure, network in different stages with the help of high-throughput sequencing technology. The results showed that the alpha diversity of the soil bacterial community showed a continuous decreasing trend during the seasonal freeze-thaw period. The relative abundance of dominant bacterial groups (Proteobacteria (39.04%-41.28%) and Bacteroidota (14.61%-20.12%)) did not change significantly during the freeze-thaw period. At the genus level, different genera belonging to the same phylum dominated in different stages, or there were clusters of genera belonging to different phylum. For example, g_Ellin6067, g_unclassified_f_Geobacteraceae, g_unclassified_f_Gemmatimonadaceae coexisted in the same cluster, belonging to Proteobacteria, Desulfobacterota and Gemmatimonadota respectively, and their abundance increased significantly during the freezing period. This adaptive freeze-thaw phylogenetic model suggests a heterogeneous stress resistance of bacteria during the freeze-thaw period. In addition, network analysis showed that, although the bacterial network was affected to some extent by environmental changes during the initial freezing period and its recovery in the thawing period lagged behind, the network complexity and stability did not change much as a whole. Our results prove that soil bacterial communities in alpine wetlands are highly resistant and adaptive to seasonal freeze-thaw conditions. As far as we know, compared with short-term freeze-thaw cycles research, this is the first study examining the influence of seasonal freeze-thaw on soil bacterial communities in alpine wetlands. Overall, our findings provide a solid base for further investigations of biogeochemical cycle processes under future climate change.

Large amounts of carbon sequestered in permafrost on the Tibetan Plateau (TP) are becoming vulnerable to microbial decomposition in a warming world. However, knowledge about how the responsible microbial community responds to warming-induced permafrost thaw on the TP is still limited. This study aimed to conduct a comprehensive comparison of the microbial communities and their functional potential in the active layer of thawing permafrost on the TP. We found that the microbial communities were diverse and varied across soil profiles. The microbial diversity declined and the relative abundance of Chloroflexi, Bacteroidetes, Euryarchaeota, and Bathyarchaeota significantly increased with permafrost thawing. Moreover, warming reduced the similarity and stability of active layer microbial communities. The high-throughput qPCR results showed that the abundance of functional genes involved in liable carbon degradation and methanogenesis increased with permafrost thawing. Notably, the significantly increased mcrA gene abundance and the higher methanogens to methanotrophs ratio implied enhanced methanogenic activities during permafrost thawing. Overall, the composition and functional potentials of the active layer microbial community in the Tibetan permafrost region are susceptible to warming. These changes in the responsible microbial community may accelerate carbon degradation, particularly in the methane releases from alpine permafrost ecosystems on the TP. Warming-induced permafrost thawing increased the abundance of anaerobic microorganisms and functional genes involved in labile carbon degradation and methane cycles, which could accelerate soil carbon degradation on TP.