Permafrost thaw represents one of Earth's largest climate feedback risks, potentially releasing vast carbon (C) stores as greenhouse gases (GHG). However, our ability to predict emissions remains limited by poor understanding of how changing organic matter (OM) composition affects microbial carbon processing. We test a metabolism-centered redox framework, which views microbial processes as coupled oxidative-reductive reactions, to mechanistically explain how organic matter metabolite quality controls greenhouse gas production in permafrost-affected peatland ecosystems. Rather than relying solely on geochemical redox measurements, our approach examines how microbes balance electron flow through metabolic pathways. Using active layer peat (9-19 cm) from contrasting environments (bog and fen), we employed multi-omics approaches, including metabolomics, metagenomics, and metatranscriptomics, to link OM chemistry to microbial function. Our results reveal distinct dissolved organic matter metabolite composition, with fen systems enriched in compounds with higher substrate quality (low molecular weight (MW) sugars with high H:C ratios and low aromaticity) and bog systems dominated by compounds with lower substrate quality (high MW phenols with lower H:C ratios and higher aromaticity). In fen samples, these sugar-like compounds correlated with higher oxidative metabolism and methanogenesis, supported by increased glycolysis gene expression. Initially, electrons from increased oxidative metabolism were balanced through nitrate and sulfate reduction, but as these electron acceptors were depleted, methanogenesis increased to maintain redox balance. Fen samples showed rapid degradation of both high- and low-substrate-quality compounds, suggesting sufficient energy for efficient C cycling. Conversely, bog samples exhibited more polyphenolic compounds, lower glycolysis activity, and higher stress-related gene expression, suggesting energy was diverted towards cell maintenance under acidic conditions rather than C processing. This approach suggests that predicting greenhouse gas emissions requires an understanding of how organic matter quality shapes microbial energy allocation strategies, providing a mechanistic framework for improving emission predictions from permafrost-affected peatlands and similar ecosystems.

Soil salinity, a critical environmental stressor, substantially impacts plant growth and productivity. It induces osmotic stress, disrupts ion homeostasis, and triggers the excessive production of reactive oxygen species (ROS), which can lead to oxidative damage within plant cells. To counteract these detrimental effects, plants have evolved sophisticated defense mechanisms, one of which involves the production of secondary metabolites (SMs). These SMs function as biostimulants that bolster antioxidative defenses and modulate signal transduction pathways, thus enhancing the plant's tolerance to salt stress. Recent evidence reveals SMs like sulforaphane (glucosinolate-derived) uniquely stabilize redox cofactors and reprogram stress-responsive miRNAs. Furthermore, they influence key signaling cascades, such as the mitogen-activated protein kinase (MAPK) pathway and various hormone-regulated pathways, which are instrumental in orchestrating adaptive responses to saline conditions. The regulation of SMs biosynthesis under salt stress is mediated by transcription factors like MYB, WRKY, and bHLH, which are essential for activating the genes involved in these metabolic pathways. Elucidating the intricate mechanisms by which SMs operate as biostimulants not only advances our understanding of plant stress responses but also paves the way for developing sustainable agricultural practices aimed at improving crop resilience in saline environments. This knowledge is instrumental for cultivating crops that can thrive under challenging soil conditions, ultimately contributing to global food security.

Soybean, a globally significant and versatile crop, serves as a vital source of both oil and protein. However, environmental factors such as soil salinization pose substantial challenges to its cultivation, adversely affecting both yield and quality. Enhancing the salt tolerance of soybeans can mitigate yield losses and promote the development of the soybean industry. Members of the plant-specific transcription factor family NAC play crucial roles in plant adaptation to abiotic stress conditions. In this study, we screened the soybean GmNAC family genes potentially involved in the salt stress response and identified 18 GmNAC genes that may function during the early stages of salt stress. Among these, the GmNAC035 gene exhibited a rapid increase in expression within one hour of salt treatment, with its expression being induced by abscisic acid (ABA) and methyl jasmonate (MeJA), suggesting its significant role in the soybean salt stress response. We further elucidated the role of GmNAC035 in soybean salt tolerance. GmNAC035, a nuclear-localized transcriptional activator, enhances salt tolerance when overexpressed in Arabidopsis, reducing oxidative damage and boosting the expression of stress-responsive genes. It achieves this by regulating key stress response pathways, including the SOS pathway, calcium signaling, and ABA signaling. These findings highlight the potential of GmNAC035 as a genetic engineering target to improve crop salt tolerance.

The disposal of tailings in a safe and environmentally friendly manner has always been a challenging issue. The microbially induced carbonate precipitation (MICP) technique is used to stabilise tailings sands. MICP is an innovative soil stabilisation technology. However, its field application in tailings sands is limited due to the poor adaptability of non-native urease-producing bacteria (UPB) in different natural environments. In this study, the ultraviolet (UV) mutagenesis technology was used to improve the performance of indigenous UPB, sourced from a hot and humid area of China. Mechanical property tests and microscopic inspections were conducted to assess the feasibility and the effectiveness of the technology. The roles played by the UV-induced UPB in the processes of nucleation and crystal growth were revealed by scanning electron microscopy imaging. The impacts of elements contained in the tailings sands on the morphology of calcium carbonate crystals were studied with Raman spectroscopy and energy-dispersive X-ray spectroscopy. The precipitation pattern of calcium carbonate and the strength enhancement mechanism of bio-cemented tailings were analysed in detail. The stabilisation method of tailings sands described in this paper provides a new cost-effective approach to mitigating the environmental issues and safety risks associated with the storage of tailings.

Background and AimsMicroorganisms are essential for carbon and nitrogen cycling in the active layer of permafrost regions, but the distribution and controlling factors of microbial functional genes across different land cover types and soil depths remain poorly understood. This gap hinders accurate predictions of carbon and nitrogen cycling dynamics under climate change. This study aims to explore how land cover type and soil depth influence microbial functional gene distribution in the Qinghai-Tibet Plateau's permafrost regions.MethodsSoil samples (0-50 cm) were collected from alpine wet meadows, alpine meadows, and alpine steppes. We analyzed the samples for physicochemical properties, microbial amplicon sequencing, and metagenomic sequencing. Correlation analyses were conducted between microbial community structure, functional genes, and environmental factors to identify the drivers of microbial carbon and nitrogen cycling.ResultsBacterial richness was 6.03% lower in steppe soils compared to wet meadow soils. Steppe soils exhibited the highest aerobic respiration potential, while deeper wet meadow soils had enhanced anaerobic carbon fixation potential and a higher abundance of carbon decomposition-related genes. Nitrogen assimilation was highest in steppe surface soils, whereas denitrification and ammonification were greatest in wet meadow soils. Carbon cycling potential was influenced by total soil carbon, nitrogen, phosphorus, and belowground biomass, while nitrogen cycling was driven by belowground biomass, soil moisture, and pH.ConclusionOur findings underscore the role of environmental factors in microbial functional gene distribution, providing new insights for modeling carbon and nitrogen cycling in alpine permafrost ecosystems under climate change.

Zinc, an important micronutrient, offers a crucial role in plant growth and development. However, its deficiency can significantly impair plant growth by disrupting essential physiological processes, leading to stunted growth and reduced reproductive capacity. Agronomic Zn biofortification offers the dual benefits of enhancing yield and improving grain Zn concentration. In this study, we evaluated various doses of zinc sulfate (ZnSO4; 0, 100, 200, 300, 400, and 500 mM) for their effectiveness in improving the performance of rice cultivars (Basmati-198 and PK-386) in alkaline Zn-deficient soil. Our results showed that ZnSO4 application significantly enhanced seedlings performance where 400 mM dose outperformed other treatments. Notably, ZnSO4 application at 400 mM increased seedling Zn accumulation by 152.40% and 125.96% in Basmati-198 and PK-386, respectively, over control. This dose also improved root dry weight by 74.52%, net photosynthesis by 41%, the activities of catalase (CAT), ascorbate peroxidase (APX), peroxidase (POD) and superoxide dismutase (SOD) by 79.88%, 23.80%, 58.77% and 75.72%, respectively, in Basmati-198 compared with PK-386. Moreover, ZnSO4 application (at 400 mM) alleviated oxidative damage by reducing malondialdehyde (58.12% and 56.63%), hydrogen peroxide (60.13% and 58.15%), and electrolyte leakage (31.39% and 29.06%) in Basmati-198 and PK-386, respectively, compared with the control without ZnSO4 supplementation. This study also demonstrated that ZnSO4 application increased the expression of bZIP genes, including OsbZIP08, OsbZIP16, OsbZIP21, and OsbZIP60, which are highly responsive to Zn deficiency in rice. Notably, the expression levels of these genes were highest following ZnSO4 application at 400 mM, resulting in a 7.1- and eightfold increase in OsbZIP21 expression, a 6.2- and 7.4-fold increase in OsbZIP16 expression, a 5- and 6.3-fold increase in OsbZIP08 expression, and a 4.5- and fivefold increase in OsbZIP60 expression in PK-386 and Basmati-198, respectively, compared to the control. The highest fold-change expression was observed for OsbZIP21 gene in Basmati-198, followed by OsbZIP16 and OsbZIP08, while OsbZIP60 exhibited the lowest fold change in the same cultivar. These findings contribute to ongoing efforts to enhance plant nutrient uptake efficiency and deepen our understanding of the mechanisms governing Zn assimilation in plants.

Tire wear particles (TWPs) attract attention because of their harmful impact on the soil ecosystem. Nevertheless, there is limited understanding regarding how aging affects the toxicity of TWPs to soil microorganisms. Herein, a microcosm experiment was performed to compare the toxicity of pristine and UV-aged TWPs on the soil microbial community. After 28 days operation, more holes and cracks appeared on the surface of the UV-aged TWPs compared with the pristine TWPs. The diversity and community structure of soil microorganisms changed under the pristine and UV-aged TWPs exposure, with the UV-aged TWPs significantly altered nirK-type soil denitrifying bacteria. Streptomyces played an important role in connecting the nirK-type bacterial community and promoting the denitrification process under the UV-aged TWPs exposure. The soil microorganisms further promoted the membrane transport of metabolites to resist the toxic effects of UV-aged TWPs by up-regulating the ATP-binding cassette (ABC) transporters, which consumed lots of energy and led to interference in energy metabolism. Furthermore, UV-aged TWPs further stimulated the accumulation of reactive oxygen species (ROS), stimulated the soil microorganisms to secrete more extracellular polymers substances (EPS) and activated the antioxidant defense system against oxidative damage caused by UV-aged TWPs, however, the activation of SOS response in turn increased the risk of antibiotic resistance genes (ARGs) transmission.

This study investigates the role of 24-epibrassinolide (BR, 10- 2 mu M) in mitigating arsenic (As)-induced stress in maize (Zea mays L. cv. 704). Seedlings were exposed to As at concentrations of 0, 5, 10, 25, 50, 100, and 250 mu M, with or without BR application. Arsenic exposure increased oxidative damage markers such as MDA and H2O2 while BR treatment significantly enhanced antioxidant enzymes activities including ascorbate peroxidase (APX), catalase (CAT), peroxidase (POD), superoxide dismutase (SOD), glutathione reductase (GR) and glutathione Stransferase (GST), reducing reactive oxygen species (ROS) levels, and minimizing oxidative damage. Additionally, BR significantly increased proline, phenolic compounds, flavonoids, and soluble sugars, contributing to osmoprotection and stress tolerance, as well as enhancing FRAP and DPPH antioxidant activities. Furthermore, BR increased amino acids (AAs) such as proline (Pro), cysteine (Cys), glutamine (Gln), and glutamate (Glu). Gene expression analysis revealed significant upregulation of detoxification-related genes including cytochrome P450 monooxygenases (CYPs), GT1, GST27 and multidrug resistance-associated proteins (MRPs) under BR treatment. These findings suggest that BR enhances maize tolerance to As toxicity by activating detoxification pathways, improving antioxidant defense, and stabilizing metabolic processes. The results underscore the potential application of BR in sustainable agriculture to improve crop resilience in As-contaminated soils.

Despite its proven high toxicity, unsymmetrical dimethylhydrazine (UDMH) continues to be used in rocket technology and some other areas of human activity. In this work, the ability of plant-bacterial consortia to reduce the genotoxicity of UDMH and its incomplete oxidation products was investigated. Genotoxicity was assessed using a specific lux-biosensor, Escherichia coli MG1655 pAlkA-lux, which emits stronger light when cellular DNA is alkylated. For microbiological biodegradation, the Bacillus subtilis KK1112 strain was isolated from the soil via a two-stage selection process for resistance to high UDMH concentrations exceeding 5000 MAC. This strain's ability to biodegrade UDMH was demonstrated, as treatment of UDMH-polluted medium with KK1112 resulted in reduced DNA alkylation. A synergistic reduction in the DNA-alkylating potency of UDMH oxidation products was studied under the combined application of bacteria KK1112 and plant seedlings: Bromus inermis Leyss, Medicago varia Mart. and Phleum pratense L. The greatest effect was achieved when bacteria were used in combination with B. inermis. KK1112 cells accelerated seedling development and mitigated UDMH-induced growth inhibition. The findings suggest that the consortium of KK1112 and B. inermis has a great potential for remediation of UDMH-polluted soils in arid climatic zones.

Grain size distribution (GSD) is crucial for understanding soil properties and surface processes. We find that both terrestrial soils and lunar soils are subjected to a unified GSD function, P(D)= g(mu )D-mu exp(-D/Dc), reducing the textural fractions and grade modes to a parameter pair (mu, Dc), which unifies terrestrial and extraterrestrial soils in granular configuration, beyond the environments and mechanisms of soil genesis. To construct a framework of the soil formation, we generalize the textural composition to a grade space representing the granular configuration, and conceptualize soil genesis as the random aggregation of the fractal fragmentation of parent lithospheric material and fragments from other sources (e.g., meteorites impacts or surface transport processes). Random simulation reproduces the multiple grade modes observed in soils, and spontaneously derives the unified GSD function. Then we numerically generate the (mu, Dc)-fields for soils on earth and moon, which refine the digital data mapping based on site measurements and depict the local fluctuation of soil parameters. The GSD unity also provides a tool of generating numerical simulants of lunar soils to fill the gap in material simulants. The study leads to a GSD-paradigm (in contrast to the conventional landscape-paradigm) in soil study, which is expected to facilitate the data harmonization on earth and promote the generation of lunar regolith data in favor of the in-situ resource utilization and base construction on moon.