Arbuscular mycorrhizal (AM) fungi are important plant symbionts that provide plants with nutrients and water as well as support plant defences against pests and disease. Consequently, they present a promising alternative to using environmentally damaging and costly fertilisers and pesticides in agricultural systems. However, our limited understanding of how agricultural practices impact AM fungal diversity and functions is a key impediment to using them effectively in agriculture. We assessed how organic and conventional agricultural management systems shaped AM fungal communities. We also investigated how AM fungal communities derived from these agricultural management systems affected crop biomass and development. Six soil samples from five organically and five conventionally managed agricultural sites were used to cultivate Sorghum bicolor. Plant growth, plant nutrient concentrations and AM fungal colonisation rates were analysed alongside DNA metabarcoding of community composition. We observed that soil from conventional agricultural fields resulted in a pronounced reduction in sorghum biomass (-53.6%) and a significant delay in flowering compared to plants grown without AM fungi. Sorghum biomass was also reduced with soil from the organic system, but to a lesser extent (-30%) and without a delay in flowering. Organic systems were associated with a large proportion of AM fungal taxa (50.5% of VTs) not found in conventional systems, including Diversispora (r(2) = 0.09, p < 0.001), Archaeospora (r(2) = 0.07, p < 0.001) and Glomus (r(2) = 0.25, p < 0.001) spp., but also shared a large proportion of taxa with conventional systems (42.3% of VTs). Conventional systems had relatively few unique taxa (7.2% of VTs). Our results suggest that conventional agricultural practices selected against AM fungi that were, in this context, more beneficial for host plants. In contrast, organic management practices mitigate this negative effect, likely due to the presence of specific key AM fungal taxa. However, this mitigation is only partial, as less beneficial AM fungal taxa still persist, probably due to abiotic factors associated with agricultural management and the sensitivity of AM fungi to these factors. This persistence explains why the effect is not entirely eradicated. Read the free Plain Language Summary for this article on the Journal blog.

Timber wood is a building material with many positive properties. However, its susceptibility to microbial degradation is a major challenge for outdoor usage. Although many wood-degrading fungal species are known, knowledge on their prevalence and diversity causing damage to exterior structural timber is still limited. Here, we sampled 46 decaying pieces of wood from outdoor constructions in the area of Hamburg, Germany; extracted their DNA; and investigated their microbial community composition by PCR amplicon sequencing of the fungal ITS2 region and partial bacterial 16S rRNA genes. In order to establish a link between the microbial community structure and environmental factors, we analysed the influence of wood species, its C and N contents, the effect of wood-soil contact, and the importance of its immediate environment (city, forest, meadow, park, respectively). We found that fungal and bacterial community composition colonising exterior timber was similar to fungi commonly found in forest deadwood. Of all basidiomycetous sequences retrieved, some, indicative for Perenniporia meridionalis, Dacrymyces capitatus, and Dacrymyces stillatus, were more frequently associated with severe wood damage. Whilst the most important environmental factor shaping fungal and bacterial community composition was the wood species, the immediate environment was important for fungal species whilst, for the occurrence of bacterial taxa, soil contact had a high impact. No influence was tangible for variation of the C or N content. In conclusion, our study demonstrates that wood colonising fungal and bacterial communities are equally responsive in their composition to wood species, but respond differently to environmental factors.

The additions of microbial organic fertilizer (MOF), a microbial inoculant (MI), and quicklime (Q) are considered to be sustainable practices to restore land that has been damaged by continuous cropping of pepper (Capsicum annuum L.). However, the combined effects of these three additives on pepper yield, soil chemical properties, and soil microbial communities were unclear. The experimental design consists of 13 treatment groups: the untreated soil (control); soil amended solely with three treatments for each of MOF (1875-5625 kg ha-1), MI (150-450 mL plant-1), and Q (1500-4500 kg ha-1); and soil amended with combinations of MOF, MI, and Q at three comparable concentrations. A significant increase in pepper fruit diameter, length, yield, and soil available nitrogen, phosphorus, and potassium contents occurs upon exclusive and combined applications of MOF, MI, and Q. Pepper yield was greatest (29.89% more than control values) in the combined treatment with concentrations of 1875 kg ha-1 MOF, 150 mL plant-1 MI, and 1500 kg ha-1 Q. The application of Q increased soil pH and reduced soil-fungal richness. The application of MOF, MI, and Q increased the relative abundance of bacterial genera and the complexity of bacterial and fungal co-occurrence networks compared with control levels. The combined application of MOF, MI, and Q resulted in the greatest microbial network complexity. A Mantel test revealed the key role of soil available nitrogen content and bacterial diversity in the regulation of pepper growth and yield. We conclude that the combined application of MOF, MI, and Q improves soil nutrient availability and modifies soil microbial community composition, significantly promoting plant growth and pepper yield during continuous cultivation.

Deforestation and slash combustion have substantial adverse impacts on the atmosphere, soil and microbe. Despite this awareness, numerous individuals persist in opting for high-intensity Eucalyptus planting through slash-burning in pursuit of immediate profits while disregarding the environmental significance and destroying the soil. Slash-unburnt agriculture can effectively safeguard the ecological environment, and compared with slash-burning, there remains a limited understanding of its regulatory mechanisms on soil fertility and microbial community. Also, large uncertainty persists regarding the utilization of harvest residues. Thoroughly investigating these questions from various perspectives encompassing physical soil characteristics, nutrient availability, bacterial community structures, and stability is crucial. To explore the ecological advantages of slash-unburnt techniques on microorganisms and their associated ecosystems, we used two slash-unburnt (Unburnt) planting techniques: Spread (naturally and evenly covering the forest floor after logging) and Stack (residues are piled along contour lines) as well as the traditional slash Burnt method (Burnt) in a Eucalyptus plantation. A comparative analysis was conducted between the two methods. We observed that over a span of 4 years, despite the initial lower application of fertilizer in the Unburnt treatments compared with the Burnt treatment during the first 2 years, the Unburnt treatment gradually caught up or even surpassed and attained similar nutrient levels as the Burnt treatment. Alphaproteobacteria was the main phyla that indicated the difference in soil bacterial communities between Burnt and Unburnt treatments. The microbial networks also highlighted the significance of the Unburnt method, as it contributed to the preservation of crucial network nodes and the stability of soil bacterial communities. Therefore, rational utilization of harvest residue may effectively avoid the vast damage caused by slash-burning to Eucalyptus trees and the soil environment but may also increase the potential for restoring soil fertility, improving fertilizer utilization efficiency, and maintaining microbial community stability over time.

Urban greenspaces face significant anthropogenic transformation, impacting soil ecosystems, multifunctionality, and global biodiversity. With increasing population and urbanization, understanding the drivers influencing soil nematode communities in urban greenspaces is crucial for sustainable urban ecosystem management. We chose the campus of The Ohio State University (OSU) due to its unique urban settings with minimally disturbed both turf and non-turf ecosystems. This study focuses on nematodes, the often-overlooked ecological engineers which play diverse roles in ecosystem functions. Nematodes were collected from 99 sampling locations across three soil depths to represent two ecosystem types (i.e., turf and non-turf) of the OSU campus. Among plant parasitic nematodes (PPN), Helicotylenchus and Pratylenchus populations were above damage threshold limits. No specific pattern of community composition was observed in the spatial variation map. The presence of rare PPN genera in the lower soil layers had a significant impact on beta diversity. Trophic group abundances displayed distinct patterns, with turf ecosystems exhibiting higher PPN as well as total nematode abundance decreasing with soil depths. In the subsurface layer (10-30 cm), both bacterivores and fungivores were higher in the non-turf than turf ecosystem. Fungal-dominated decomposition of organic matter was observed in both ecosystem types. Soil physiochemical properties, specifically, total organic carbon and soil texture, had a significant impact on PPN community composition. However, nematode trophic group composition was more altered by ecosystem type than edaphic factors followed by soil depths. Together these three explanatory variables explained 27.5 % of the total variance in trophic group composition. Overall, this study provides insights into the complex interactions between PPN, trophic groups, soil properties, and urban ecosystem characteristics, contributing valuable knowledge for sustainable urban greenspace management.

This study assessed whether a natural regeneration or active tree-planting reforestation strategy better restored the C and N-cycle processes and associated microbiota within soils after 18 years in a Premontane Wet Life zone site in Monteverde, Costa Rica, compared to adjacent old secondary forest and pasture soils (both >60 years). Our findings apply to small-scale restoration sites (<0.5 ha plots) commonly used in Monteverde. Both restoration strategies showed recovering soil C and N-cycle processes with similar levels of TN, NH4+, NO3-, Biomass-C, and efficiency of organic C use. Both strategies appeared to positively influence the recovery of the levels and community compositional stability of the Actinobacterial, Acidobacterial, N-fixing (N-Fixer) bacterial, ammonium-oxidizing bacterial, and complex organic C-degrading fungal communities. The main differences between the two strategies were that the tree-planted and pasture soils had similar compositions of the Actinobacterial, N-Fixer, and Fungal complex organic C degrader, while the natural regeneration and pasture soils had similar compositions of these groups and the Acidobacteria. However, the community compositions of all five microbial groups were different between restored forest and the old secondary forest soils. These results suggest that while the soil ecosystems from both reforestation strategies are recovering, after 18 years, there is still more recovery to occur. Lastly, possible indicators of post-restoration soil ecosystem enhancement included increasing constancy of critical microbial group composition, efficiency of organic C conversion to biomass, Biomass-C,NH4+, NO3-, and levels of Acidothermus, Acidobacteria subgroups 2, 3, and 5, Archaeorhizomyces, Anaeromyxobacter, Bradyrhizobium, Nitrosomonas, Flavobacterium, and Nitrospira.

Island plants form the foundation for maintaining the ecology of an island. With the development of the island's infrastructure, its ecosystems become damaged to a certain extent. A comprehensive understanding of island habitats and plant community characteristics is crucial for the development of island plant communities. This paper focuses on Pingtan Island in Fujian Province, China, as the research subject. Firstly, considering the significance of the wind environment on the island, this study constructed a wind environment model for the entire island of Pingtan to evaluate the ecological sensitivity from a macro perspective. Subsequently, 33 typical sample plots were selected based on different ecologically sensitive areas to conduct a micro-survey and the characterization of the montane plant communities on Pingtan Island. The findings reveal that (1) Pingtan Island's ecological sensitivity is dominated by areas with ecological insensitivity (35.72%), moderate ecological sensitivity (33.99%), and high ecological sensitivity (18.02%). The soil texture, wind environment, and land use type are the primary influencing factors in the ecological sensitivity of Pingtan Island. (2) A total of 47 families, 82 genera, and 93 species of plants were investigated in a typical sample site in the mountainous area of Pingtan Island. The plant community structure was dominated by the successional stage of shrubs and herbs. There is some similarity in the plant composition of different ecologically sensitive areas. High ecologically sensitive areas have more species. As sensitivity increases, the dominant species in the three ecologically sensitive areas continue to undergo plant succession from Acacia confusa to Pinus thunbergii to Eurya emarginata. (3) Both community characteristics and species diversity vary between sensitive areas. The canopy density (CD) and the mean height of tree layer (MHTL) are higher in moderate ecologically sensitive areas. The mean tree diameter at breast height (MDBH) and the mean height of shrub layer (MHSL) are higher in high ecologically sensitive areas, while the mean height of herb layer (MHHL) is higher in extreme ecologically sensitive areas. Four diversity indicators increase with increasing sensitivity. In the moderate and high ecologically sensitive areas, Casuarina equisetifolia and A. confusa thrive, with Pinus thunbergii showing the opposite trend. However, species diversity is better characterized by A. confusa and P. thunbergii, with C. equisetifolia being the least diverse. Both the community characteristics and species diversity of P. thunbergii are optimal in extreme ecologically sensitive areas. In this study, the ecological sensitivity of Pingtan Island and the characteristics of montane plant communities were systematically analyzed to explore more stable montane plant communities on the island, aiming to provide a scientific basis and model reference for the ecological restoration and sustainable development of Pingtan Island and other islands.

Seasonal grazing is a common alternative to the rest-rotation grazing management regime. Although that research has been extensive on the impacts of grazing on soil organic carbon (SOC) and nitrogen (N) sequestration, there is limited understanding of the regulatory mechanisms of plant productivity and species on SOC and N sequestration under seasonal grazing. To address this problem, the response of plant properties was quantified in five different seasonal grazing regimes (no grazing control, continuous grazing, early summer and late summer grazing, mid summer and early autumn grazing, late summer and mid autumn grazing) in a semi-arid grassland of North China between 2012 and 2018. The results indicated that early summer and late summer grazing had little damage to the plant communities but reduced the SOC and N sequestration in the 10-20 cm layer, while mid summer and early autumn grazing maintained a relatively high plant productivity but resulted in the losses of SOC and N sequestration in the 0-20 cm layer. The late summer and mid autumn grazing regime enhanced SOC and N sequestration in the 0-20 cm layer by producing higher yields of Stipa krylovii and root biomass. The improved biomass of S. krylovii and roots is an indicator of soil quality evolution in the context of grazing management. It is therefore proposed that the late summer and mid autumn grazing regime, including a two-month rest period, is likely to be a beneficial strategy to conserve both plant communities and soil nutrients for sustainable management of the studied grassland.

The Loess Plateau, located in Gansu Province, is an important energy base in China because most of the oil and gas resources are distributed in Gansu Province. In the last 40 a, ecological environment in this region has been extremely destroyed due to the over-exploitation of crude-oil resources. Remediation of crude-oil contaminated soil in this area remains to be a challenging task. In this study, in order to elucidate the effects of organic compost and biochar on phytoremediation of crude-oil contaminated soil (20 g/kg) by Calendula officinalis L., we designed five treatments, i.e., natural attenuation (CK), planted C. officinalis only (P), planted C. officinalis with biochar amendment (PB), planted C. officinalis with organic compost amendment (PC), and planted C. officinalis with co-amendment of biochar and organic compost (PBC). After 152 d of cultivation, total petroleum hydrocarbons (TPH) removal rates of CK, P, PB, PC and PBC were 6.36%, 50.08%, 39.58%, 73.10% and 59.87%, respectively. Shoot and root dry weights of C. officinalis significantly increased by 172.31% and 80.96% under PC and 311.61% and 145.43% under PBC, respectively as compared with P (P<0.05). Total chlorophyll contents in leaves of C. officinalis under P, PC and PBC significantly increased by 77.36%, 125.50% and 79.80%, respectively (P<0.05) as compared with PB. Physical-chemical characteristics and enzymatic activity of soil in different treatments were also assessed. The highest total N, total P, available N, available P and SOM occurred in PC, followed by PBC (P<0.05). C. officinalis rhizospheric soil dehydrogenase (DHA) and polyphenol oxidase (PPO) activities in PB were lower than those of other treatments (P<0.05). The values of ACE (abundance-based coverage estimators) and Chao indices for rhizospheric bacteria were the highest under PC followed by PBC, P, PB and CK (P<0.05). However, the Shannon index for bacteria was the highest under PC and PBC, followed by P, PB and CK (P<0.05). In terms of soil microbial community composition, Proteiniphilum, Immundisolibacteraceae and Solimonadaceae were relatively more abundant under PC and PBC. Relative abundances of Pseudallescheria, Ochroconis, Fusarium, Sarocladium, Podospora, Apodus, Pyrenochaetopsis and Schizpthecium under PC and PBC were higher, while relative abundances of Gliomastix, Aspergillus and Alternaria were lower under PC and PBC. As per the nonmetric multidimensional scaling (NMDS) analysis, application of organic compost significantly promoted soil N and P contents, shoot length, root vitality, chlorophyll ratio, total chlorophyll, abundance and diversity of rhizospheric soil microbial community in C. officinalis. A high pH value and lower soil N and P contents induced by biochar, altered C. officinalis rhizospheric soil microbial community composition, which might have restrained its phytoremediation efficiency. The results suggest that organic compost-assisted C. officinalis phytoremediation for crude-oil contaminated soil was highly effective in the Loess Plateau, China.

While the composition and diversity of soil microbial communities play a central and essential role in biogeochemical cycling of nutrients, they are known to be shaped by the physical and chemical properties of soils and various environmental factors. This study investigated the composition and diversity of microbial communities in 48 samples of seasonally frozen soils collected from 16 sites in an alpine wetland region (Lhasa River basin) and an alpine forest region (Nyang River basin) on the Tibetan Plateau using high-throughput sequencing that targeted the V3-V4 region of 16S rRNA gene. The dominant soil microbial phyla included Proteobacteria, Acidobacteria, and Actinobacteria in the alpine wetland and alpine forest ecosystems, and no significant difference was observed for their microbial composition. Linear discriminant analysis Effect Size (LEfSe) analysis showed that significant enrichment of Hymenobacteraceae and Cytophagales (belonging to Bacteroidetes) existed in the alpine wetland soils, while the alpine forest soils were enriched with Alphaproteobacteria (belonging to Proteobacteria), suggesting that these species could be potential biomarkers for alpine wetland and alpine forest ecosystems. Results of redundancy analysis (RDA) suggest that the microbial community diversity and abundance in the seasonally frozen soils on the Tibetan Plateau were mainly related to the total potassium in the alpine wetland ecosystem, and available potassium and soil moisture in the alpine forest ecosystem, respectively. In addition, function prediction analysis by Tax4Fun revealed the existence of potential functional pathways involved in human diseases in all soil samples. These results provide insights on the structure and function of soil microbial communities in the alpine wetland and alpine forest ecosystems on the Tibetan Plateau, while the potential risk to human health from the pathogenic microbes in the seasonally frozen soils deserves attention. (C) 2020 Elsevier B.V. All rights reserved.